BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB023D01SP1|AL428035
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1098 0.0
>3x_Contig1781
Length = 20717
Score = 1098 bits (546), Expect = 0.0
Identities = 682/724 (94%), Gaps = 13/724 (1%)
Strand = Plus / Minus
Query: 235 atgcttyatmtatgtgttatatagtcatctyagaataarcgtatgcatgacatcgktgag 294
|||||| || |||||||||||||||||||| ||||||| | |||||||||||||| ||||
Sbjct: 2744 atgctttatatatgtgttatatagtcatcttagaataaac-tatgcatgacatcgttgag 2686
Query: 295 tgctttcgatygcgggtgggattgtctctgrgaatctggagcagatgcccttgtcgaagc 354
|||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 2685 tgctttcgattgcggttgggattgtctctgagaatctggagcagatgctcttgtcgaagc 2626
Query: 355 gactttcctctgtttgcaaagtcctgcgaactatacttcatcggcctgctgtgattcttg 414
|||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 2625 gactttcctctgtttg-aaagtcctgcgaactt--cttcatcgacctgctgtgattcttg 2569
Query: 415 tkggttacgtttcttgctctgtttcatcttgttgaccatctttgatttctctacgttatg 474
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2568 ttggttacgtttcttgctctgtttcatcttgttgaccatctttgatttctctacgttatg 2509
Query: 475 gatgarctctcgcgttcgaagcttgttggcctgtgagatttccaattgtagctttgcctg 534
||||| |||| |||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct: 2508 gatgaactct-gcgttcaa--cttgttggcctgtgagatttccaattgtagctttgcttg 2452
Query: 535 tctgayatcgttttctctagcgatttggtctgcgcaaatcgtgcccgatttggacccggg 594
||||| ||||||||||||||||||||| |||| ||||||| |||| ||||| |||||||
Sbjct: 2451 tctgatatcgttttctctagcgatttgttctgt-caaatcg-gccc-atttgaacccggg 2395
Query: 595 cmagtgtttaacgttcatgacgtcgtcatgggagaaatttcccttctkaccaccgatrat 654
| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||
Sbjct: 2394 caagtatttaacgttcatgacgtcgtcatggtagaaatttcccttcttaccaccgataat 2335
Query: 655 atkaccgtttagagtcgakgcgcacagtttagcgctccttcttctctgataaactcggcc 714
|| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 2334 attaccgtttagagtcgatgcgcacagtttagcg-tccttctt-tctgataaactcggcc 2277
Query: 715 caaccttcttcaaacatcgttttcttgttcccaccactcttgacacgctgctggtgcttg 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2276 caaccttcttcaaacatcgttttcttgttcccaccactcttgacacgctgctggtgcttg 2217
Query: 775 tgctcctcttcacgtttcaagaacagacggtccacttcaccgaatcttgtgagaatctgc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2216 tgctcctcttcacgtttcaagaacagacggtccacttcaccgaatcttgtgagaatctgc 2157
Query: 835 cttagcttggctgggttcatgtacggtggaaccctcgataggtaaaccaca-ccggtctt 893
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2156 cttagcttggctggtttcatgtacggtggaaccctcgataggtaaaccacacccggtctt 2097
Query: 894 gtgtttcgtcttcttatcgctcttcagcyttttgagtcgtctctgcttttctttctctat 953
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 2096 gtgtttcgtcttcttatcgctcttaagctttttgagtcgtctctgcttttctttctctat 2037
Query: 954 ctgc 957
||||
Sbjct: 2036 ctgc 2033
Score = 123 bits (61), Expect = 8e-28
Identities = 75/80 (93%), Gaps = 2/80 (2%)
Strand = Plus / Minus
Query: 1 gactgagatcmacctgaatcgaaacaaaccactgatgamcctgcctttgttcctgctcct 60
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 2949 gactgagatcaacctgaatcgaaacaaaccactgatgaacctgcctttgttcctgttc-- 2892
Query: 61 caattcatgagatgagatga 80
||||||||||||||||||||
Sbjct: 2891 caattcatgagatgagatga 2872
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.714 1.32
Gapped
Lambda K H
1.39 0.714 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5178
Number of Sequences: 1807
Number of extensions: 5178
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.1 bits)
S1: 12 (24.6 bits)
S2: 50 (101.0 bits)